how to reference the plugins used - QIIME 2 Forum
Jan 8, 2022 · I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic plugin, taxa …
q2-SCNIC installation - Library Support - QIIME 2 Forum
Aug 17, 2021 · I'm new to using QIIME2. I have installation problem with q2-SCNIC now. I fallowed this installation guide GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running SCNIC and it has …
PhD Opportunity - Soil Microbial Ecology - QIIME 2 Forum
Mar 23, 2023 · UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas. The main campus, where the graduate position will be housed, enrolls ~34,000 …
taxonomy mitochondria vs D_4__Mitochondria - General Discussion
Apr 21, 2025 · Hi everyone, I have just finished going through my qiime2 analysis following the moving pictures and fecal sample tutorial (for merging). I have created my phyloseq object using the …
Importing bins/mags into Qiime2 - Technical Support - QIIME 2 Forum
Mar 31, 2025 · Dear devs, dear users I am processing metagenome dataset. I currently follow the q2-moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I modified …
Unnasigned ASVs at lower taxonomic ranks can alter metrics of alpha …
Jan 29, 2025 · I understand and agree with the idea that unclassified ASVs are also informative and their elimination wastes valuable information. However, these sequences without a clear taxonomic …
PERMANOVA results significant, but differential abundance results ...
Oct 19, 2025 · Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem. According to PERMANOVA, there are significant …
qiime2R installation issue - Library Plugin Support - QIIME 2 Forum
Feb 13, 2020 · Library Plugin Support qiime2-r Pablo_V (Pablo V) February 13, 2020, 9:05am 1 Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R
QIIME2 Amplicon 2025.7 - qiime diversity core-metrics-phylogenetic ...
Sep 3, 2025 · QIIME2 2025.7 Conda installation on Linux Ubuntu 22.04 qiime diversity core-metrics-phylogenetic errors: qiime parameters: qiime diversity core-metrics-phylogenetic --i-table table.qza --i …
Installation troubles - Technical Support - QIIME 2 Forum
Jan 21, 2022 · conda env create -n qiime2-2021.11 --file qiime2-2021.11-py38-linux-conda.yml --verbose